Downloads
SvAnna database files are available for download from the following locations:
Version |
Genome build |
URL |
Size |
|---|---|---|---|
2204 |
hg38/GRCh38 |
~627 MB for download, ~2.3 GB unpacked |
|
2304 |
hg38/GRCh38 |
~674 MB for download, ~2.6 GB unpacked |
Use curl or wget utilities to download the files from command line:
$ wget https://storage.googleapis.com/svanna/2204_hg38.svanna.zip
or
$ curl --output 2304_hg38.svanna.zip https://storage.googleapis.com/svanna/2304_hg38.svanna.zip
Alternatively, use a GUI FTP client such as FileZilla.
Unzip the archive to get a folder with the following structure:
path/to/svanna-data
|- checksum.sha256
|- gencode.v38.genes.json.gz
|- hp.json
\- svanna_db.mv.db
In the example above, we use -d path/to/svanna-data to let SvAnna know about the resource data directory.
Check resource integrity
Check that the download went well by running:
$ sha256sum -c checksum.sha256
All lines should end with OK.